PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496878.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 292aa    MW: 32811.3 Da    PI: 5.23
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-112262661055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_004496878.1 226 KRRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 266
                     8******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.342216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-14222281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-11225270No hitNo description
Gene3DG3DSA:4.10.280.105.5E-12225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSSEQTCEE WSSLSGFYTA EEADFMDHLL DNFQVPQYHY GNFNLEIPST LWPGHQSTIM  60
MNNNTSHFPQ NADNSNTDFL SFLQATNSIA DTTNIGQEVI GDKNFQAHKV FEQVLLSESV  120
EEGVNNNLEN SGKRSRSLMK VQKNNGNVKS RKKLKSSFIS NTEEDVSPDL KEQNLSSEDD  180
EFNASQELKA GGSSISKNNS KAQKSKGKSK SNRGSSAIDP QGVYAKRRRE RINERLRILQ  240
SLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY SPIAYNGMNI GL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-41AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496878.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLG7IE611e-139G7IE61_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGGLYMA20G26991.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-38bHLH family protein